PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0685s0030.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 315aa    MW: 35619.9 Da    PI: 5.0239
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0685s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.11.6e-23121333128
                     NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkya..tgkrknratksgyWkat 86 
                             +G rF+Pt  el++++Lk k+ g++  + + i+ + d+y+++Pw+L    ++++ e yfFs+ + ky+  +++r nr+t +g+W a+
  SapurV1A.0685s0030.1.p  12 VGERFRPTGVELINHFLKGKLLGNDQLV-SRIPLLdDLYQFDPWNLS---YSDDGEGYFFSPLHPKYPgsKNRRINRSTGTGTWLAK 94 
                             799**********************777.55777769*********7...4578899**********96567899************ PP

                     NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             gkd e++s+ +ge++g+++++v     +++    + vmhey++
  SapurV1A.0685s0030.1.p  95 GKDYEIKSEfTGEVIGIRRIFVHS--CEKD--GIKYVMHEYSI 133
                             ********99999********997..3444..4689*****86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-289147IPR003441NAC domain
PROSITE profilePS5100527.44610162IPR003441NAC domain
PfamPF023656.1E-1412133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MTSKTTPSEY SVGERFRPTG VELINHFLKG KLLGNDQLVS RIPLLDDLYQ FDPWNLSYSD  60
DGEGYFFSPL HPKYPGSKNR RINRSTGTGT WLAKGKDYEI KSEFTGEVIG IRRIFVHSCE  120
KDGIKYVMHE YSIPNQSSLV LCKVMKKMPS KKSEGPCKKV KKRKEAADKN EKADMPYNKE  180
NITPEPDEGF ENWITSDKSD LSPYNNIISS KDQQAEKSTS DNGGKDRQKT SSASADLDAN  240
FTTLEDQVIH ETLPPLQSLC GYDQQDYFSS DDFITLDDLP LMLPEQVNTY NGPAGTPMFL  300
PMEDHPIWLE SLWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-161315223173NAC domain-containing protein 19
3swm_B2e-161315223173NAC domain-containing protein 19
3swm_C2e-161315223173NAC domain-containing protein 19
3swm_D2e-161315223173NAC domain-containing protein 19
3swp_A2e-161315223173NAC domain-containing protein 19
3swp_B2e-161315223173NAC domain-containing protein 19
3swp_C2e-161315223173NAC domain-containing protein 19
3swp_D2e-161315223173NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163KKVKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371555.11e-140hypothetical protein POPTR_0019s13130g
TrEMBLU5FIV51e-140U5FIV5_POPTR; Uncharacterized protein
STRINGPOPTR_0019s13130.11e-139(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2314134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.35e-21NAC transcription factor-like 9